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Bioconductor Case Studies
Langbeschreibung
Bioconductor software has become a standard tool for the analysis and comprehension of data from high-throughput genomics experiments. Its application spans a broad field of technologies used in contemporary molecular biology. In this volume, the authors present a collection of cases to apply Bioconductor tools in the analysis of microarray gene expression data. Topics covered include
Inhaltsverzeichnis
The ALL Dataset.- R and Bioconductor Introduction.- Processing Affymetrix Expression Data.- Two Color Arrays.- Fold Changes, Log Ratios, Background Correction, Shrinkage Estimation, and Variance Stabilization.- Easy Differential Expression.- Differential Expression.- Annotation and Metadata.- Supervised Machine Learning.- Unsupervised Machine Learning.- Using Graphs for Interactome Data.- Graph Layout.- Gene Set Enrichment Analysis.- Hypergeometric Testing Used for Gene Set Enrichment Analysis.- Solutions to Exercises.
ISBN-13:
9780387772400
Veröffentl:
2010
Seiten:
284
Autor:
Florian Hahne
Serie:
Use R!
eBook Typ:
PDF
eBook Format:
EPUB
Kopierschutz:
1 - PDF Watermark
Sprache:
Englisch
106,99 €*
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